74 [
alphabet_size]{
'=',
'A',
'C',
'M',
'G',
'R',
'S',
'V',
'T',
'W',
'Y',
'H',
'K',
'D',
'B',
'N'};
157inline namespace literals
174constexpr dna16sam operator""_dna16sam(
char const c)
noexcept
195 for (
size_t i = 0; i < n; ++i)
196 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition alphabet_base.hpp:258
A 16 letter DNA alphabet, containing all IUPAC symbols minus the gap and plus an equality sign ('=').
Definition dna16sam.hpp:45
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition dna16sam.hpp:112
static constexpr rank_type rank_complement_table[alphabet_size]
The rank complement table.
Definition dna16sam.hpp:77
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition dna16sam.hpp:106
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition dna16sam.hpp:120
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition dna16sam.hpp:74
friend base_t
Befriend seqan3::nucleotide_base.
Definition dna16sam.hpp:51
constexpr dna16sam() noexcept=default
Defaulted.
static constexpr rank_type rank_complement(rank_type const rank)
Returns the complement by rank.
Definition dna16sam.hpp:97
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition nucleotide_base.hpp:40
alphabet_base< dna16sam, size, char > base_t
Type of the base class.
Definition nucleotide_base.hpp:43
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition transform.hpp:80
Provides seqan3::nucleotide_base.